Eggplant Lasagna Boats (Vegetarian, Low Carb)

5 from 14 votes
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Eggplant Lasagna Boats with mushrooms, spinach, and a secret ingredient to boost protein. This stuffed eggplant lasagna recipe is vegetarian, low carb, and nutrient-packed.

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Eggplant lasagna boats arranged in a white baking dish topped with fresh basil leaves.

Why You’ll Love this Eggplant Lasagna Recipe

Not only is this stuffed eggplant recipe way simpler than making actual lasagna, it’s also more nutritious.

It features a trifecta of veggies, protein-packed cottage cheese (YES, cottage cheese–more on that later), and lycopene-rich tomato rich.

If you’re following a low carb lifestyle, this recipe is especially well-suited for you. While you have the option to add meat, I find it plenty satiating as is.

Give this recipe a try for the ultimate low carb eggplant lasagna experience. And, if you have leftovers, it reheats exceptionally well the next day.

The Ingredients

Ingredients in separate bowls with blue labels.
  • Eggplant: You need two medium globe eggplants for this recipe. Alternatively, you can use three smaller ones, however they need to be the globe variety. (Unfortunately, Japanese eggplants are too slender to sufficiently stuff.)
  • Mushrooms: I love using sliced baby bella mushrooms for meaty texture and a blast of umami. Alternatively, you can use shiitake, white button, or chopped portobello mushroom caps.
  • Spinach: Use baby spinach or lacinato kale for a mega nutrient boost. This greens will cook down a LOT, so feel free to add a few extra handfuls to bulk up the filling.
  • Tomato Sauce: You can use either homemade or store-bought marinara sauce for this recipe. My personal go-to is Rao’s, which tastes the freshest of any jarred variety I’ve tried.
  • Cottage Cheese: I know this seems like a wildcard ingredient, however cottage cheese is an excellent substitute for ricotta. It’s rich in protein, and overall offers a better nutrient profile. My go-to brand is Good Culture, which has gut-healthy probiotics, too!
  • Garlic: For an aromatic boost.
  • Mozzarella: I strongly suggest buying a block of organic mozzarella and shredding it yourself. The pre-shredded stuff normally has additives that can affect meltability.
Eggplant lasagna boats in a baking pan topped with basil.

Step-by-Step Instructions

Step 1: Roast Eggplant. Slice the eggplants in half lengthwise, and brush the flesh with olive oil. Place eggplants halves, flesh side-down, on a rimmed baking sheet or 9×13″ pan. Bake for 20 to 25 minutes, until flesh softens.

Let stand at room temperature until cool enough to handle.

Eggplant halves flesh side down in a white baking pan

Step 2: Sauté Vegetables. Heat oil in a large skillet over medium heat. Once hot, add mushrooms and onion, and cook until soft, about 5 to 7 minutes.

Next, add chili flakes, garlic, spinach, salt, and pepper; cook 2 more minutes, until spinach wilts.

Mushrooms, onion, and spinach sautéing in a black skillet.

Step 3: Scoop Out Eggplant Flesh, leaving about a 1/2-inch-thick border around skin to create a boat.

Step 4: Add Eggplant to Pan with mushrooms, and mix to combine. Next, add 1 1/4 cups marinara sauce to the filling, and stir to combine.

Black skillet filled with vegetables, tomato sauce, and eggplant flesh being mixed in.

Step 5: Stuff Eggplant. Pour remaining 1/2 cup marinara sauce into the bottom of a 13×9 inch pan.

Place the eggplant halves in the pan, and spoon the filling evenly into each. Spoon dollops of cottage cheese into eggplant, and scatter mozzarella overtop.

Eggplant halves in a white pan topped with mozzarella cheese.

Step 6: Bake Lasagna Boats until the cheese melts, about 10 to 15 minutes. Broil for the final 2 to 3 minutes.

Serving Suggestions:

This low carb eggplant lasagna is mighty delicious on its own, however also plays with other dishes.

  • To keep dinner low carb/keto-friendly, serve my Sautéed Broccoli or Cucumber Sesame Salad on the side.
  • For a protein boost, serve these eggplant boats alongside Pan-Seared White Fish or my 5-Ingredient Maple-Mustard Salmon. You also can’t go wrong with some Chickpea Meatballs, which are a meal prep staple over here.
  • If you’re not going the low-carb route, this dish is excellent with some homemade garlic bread. I usually make it myself using sourdough bread, grass-fed butter, and some freshly grated Parmesan cheese.

How to Store and Reheat:

  • do not recommend freezing cooked eggplant. Unfortunately, it become watery when thawed and doesn’t hold up well in the freezer.
  • You can, however prep this recipe ahead and store it in the refrigerator!
  • To Prepare Ahead: Roast the eggplant and prepare the filling up to 1 day in advance. Store each component separately in the refrigerator. Assemble the Eggplant Lasagna Boats just before baking or up to four hours in advance and refrigerate.
  • Cooked Eggplant Lasagna Boats can be stored in the refrigerator for up to four days.
  • To Reheat: Warm gently in the microwave or covered in a 300ºF oven, until heated through.
A spoon pulling out a bite of lasagna eggplant

Eggplant Health Benefits:

Eggplants are part of the nightshades family, which have gained somewhat of a bad rap the last few years. This group of veggies contain trace amounts of the toxin solanine, which is responsible for their bitter taste. However, in order to notice any negative GI effects, one would need to consume a very large amount.

For this reason, eggplant certainly should not be avoided simply because it is a nightshade. Plus, eggplants are packed with an array of good-for-you nutrients. In addition to being rich in fiber, they also offer manganese (essential for normal growth), folate, potassium, plus vitamins K and C.

When shopping for eggplant, choose ones with shiny skin and a green stem, which are signs of freshness.

A single stuffed eggplant boat on a white plate topped with fresh basil leaves.

More Reader-Favorite Eggplant Recipes:

If you make this vegetarian eggplant lasagna recipe, snap a pic and tag #dishingouthealth on Instagram! Also, follow along on Facebook and Pinterest for the latest recipe updates!

5 from 14 votes

Eggplant Lasagna Boats

Eggplant Lasagna Boats with mushrooms, spinach, and a secret ingredient to boost protein. This stuffed eggplant lasagna recipe is vegetarian, low carb, and nutrient-packed.
Prep Time: 15 minutes
Cook Time: 35 minutes
Total Time: 50 minutes
Servings: 4

Equipment

  • 13×9" Baking Pan
  • Large skillet

Ingredients  

  • 2 medium globe eggplants
  • 3 Tbsp. extra-virgin olive oil, divided
  • 8 oz. sliced baby bella mushrooms
  • 1 small yellow onion, finely chopped (about 1 cup)
  • 3 garlic cloves, minced
  • 1/2 tsp. chili flakes
  • 1/2 tsp. kosher salt, divided
  • 3 handfuls fresh baby spinach
  • 1 3/4 cups homemade or store-bought marinara sauce (I use Rao's brand)
  • 3 Tbsp. chopped fresh basil plus more for garnish
  • 1 cup whole-milk cottage cheese (I use Good Culture brand)
  • 1 cup freshly grated mozzarella cheese
  • Optional breadcrumb topping: 1/4 cup panko breadcrumbs mixed with 2 tsp. extra-virgin olive oil
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Instructions 

  • Preheat oven to 425ºF. Slice the eggplants in half lengthwise. Brush the flesh evenly with 1 Tbsp. olive oil, and lightly season with 1/4 tsp. salt.
    Place eggplant halves, flesh side-down, on a rimmed baking sheet or 13×9" baking pan. Bake for 20 to 25 minutes, until flesh softens. Let stand at room temperature until cool enough to handle.
  • Meanwhile, heat remaining 2 Tbsp. oil in a large skillet over medium heat. Once hot, add mushrooms and onion, and cook until softened, about 6 to 7 minutes. Add garlic, chili flakes, 1/4 tsp. each salt and black pepper, and spinach; cook 2 more minutes, until spinach wilts. Stir in 1 1/4 cups marinara sauce and basil.
  • Use a spoon to partially hollow out eggplants, leaving about a 1/2-inch-thick border around skin to create a boat. Roughly chop eggplant flesh, and add to pan with mushrooms; mix to combine.
  • Spread remaining 1/2 cup marinara sauce into the bottom of a 13×9" inch baking pan. Arrange the eggplant boats in the pan, and spoon the filling evenly into each one. Spoon dollops of cottage cheese into stuffed eggplant, and scatter mozzarella overtop. (If using breadcrumb topping, sprinkle it over the cheese.)
  • Place the pan back in the oven and bake for 15 minutes, until the cheese melts. For a more golden topping, broil on HIGH for an additional 2 to 3 minutes.

Notes

do not recommend freezing these eggplant boats. Eggplant turns watery when thawed and doesn’t hold up well in the freezer.
*PREP AHEAD: Roast the eggplant and prepare the filling up to 1 day in advance. Store each component separately in the refrigerator. Assemble the Eggplant Lasagna Boats just before baking or up to four hours in advance and refrigerate.
*STORE: Refrigerate leftovers for up to four days.
*REHEAT: Warm gently in the microwave or covered in a 300ºF oven, until heated through.

Nutrition

Serving: 1boat | Calories: 390kcal | Carbohydrates: 28g | Protein: 19g | Fat: 23g | Saturated Fat: 6g | Sodium: 775mg | Fiber: 8g | Sugar: 13g

I calculate these values by hand to ensure accuracy, however expect up to a 10% variable depending on food brands.

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19 Comments

  1. Eva says:

    5 stars
    I have made this a few times now and it is amazing! The best thing is it is very customizable. Sub veggies as desired. My only must do’s are to double the recipe as the leftovers heat up wonderfully in the oven and taste even better after a few days, fresh basil on top and yes to the breadcrumbs. The eggplant meatballs on your site are another favorite so thank you for sharing hearty veg recipes that taste delicious!

  2. Eliza says:

    5 stars
    I made this last night for my husband and in-laws and it was a hit! I plan on making it again for a Christmas dinner. I have a couple questions though since I’m new to cooking with eggplant. What am I supposed to do with the seeds when scooping out the flesh? Leave them or try and discard as many as I can? Also, I baked the eggplant for a little over 20min but the skin was still a little tough when we were eating. My plan will be to back then for 30-35min next time. Any tricks for helping to determine when the eggplant is ready? Thank you so much for an amazing recipe!!

  3. Lori says:

    5 stars
    This recipe was delicious! The ratio of the ingredients was perfect. I was tempted to add more tomato sauce but refrained and I’m glad I did because the recipe as written produced a thick rather than soupy filling. This is definitely a keeper. I’ve just discovered your site and plan to return for more great ideas. I love that this is low carb/diabetic friendly, too, as a member of my household is diabetic. This satisfies an Italian food craving in a healthy, no pasta way. Thank you!